NDKmol--MolecularViewerforAndroid
==About==
NDKmolisamolecularviewerforAndroid.Youcanviewthreedimensionalstructuresofproteins,nucleicacidsandsmallmolecules.NDKmolsupportsmostofcommonrepresentationsformolecules,suchasribbon,trace,stick,sphereandline.NDKmolalsosupportssymmetryoperations;biologicalassembliesandcrystalpackingcanbedisplayed.YoucansearchanddownloadstructuresfromRCSBPDBandNCBIPubchem.
NDKmolhasalmostsamefunctionalityasGLmol,whichiswrittenin
WebGL/JavascriptandrunsonWebbrowsers.YoucantryGLmolathttp://webglmol.sourceforge.jp/index-en.html
==Features==
*ReadPDBorSDF/MOLfile
*Rotate/Translate/Zoommodelbyfinger
*Representations
-Line
-Stick
-Sphere(vanderWaalsradius)
-Alphacarbontrace
-Ribbon(ThinorThick)
-Strand
-Bfactortube
-Nucleicacidladder
-Nucleicacidline
-solvent'stars'
*Smoothingofbeta-sheets
*Coloring
-Bychain
-Bysecondarystructure(whendefinedinSHEET/HELIXrecords)
-ByElements
-Gradation(a.k.achainbow)
-Bfactor
-polar/nonpolar
*Crystallography
-Displayunitcell
-Showcrystalpacking(whendefinedinREMARKsection)
-Displaybiologicalassembly(whendefinedinREMARKsection)
==HowtoUse==
Whenlaunched,NDKmolautomaticallyloadsPorin(PDBID:2POR)asanexample.Youcanrotatethemoleculebyyourfinger.
Tozoomortranslatethemolecule,pressMENUbuttoninyourphone/tabletandselectthemode.Two-fingergesturesarealsosupported.
EverythingelsecanbedonefromtheMENU.
ToloadotherPDBfiles,pleaseputthefilein"PDB"directoryoftheSDcardandselect"Open"commandintheMENU.YoucanalsodownloadstructuresdirectlyfromRCSBPDBandNCBIPubChemwebserver.Select"SearchandDownload"inthemenu.
==Contact==
Projectwebsiteislocatedathttp://webglmol.sourceforge.jp/.Youcangetsourcecodesforthisprogramfromhere.
Commentsandsuggestionsarewelcomeathttp://sourceforge.jp/projects/webglmol/forums/orbiochem_fan@users.sourceforge.jp
===LICENSEnotice===
NDKmolitselfislicensedunderGNULesserGeneralPublicLicenseasfollows.
However,PDBfilesincludedasexamplesareunderDIFFERENTconditions.
Pleaseconsult
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/pdb_advisory.html
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NDKmol-MolecularViewerforAndroid
(C)Copyright2011,biochem_fan
Thisprogramisfreesoftware:youcanredistributeitand/ormodify
itunderthetermsoftheGNULesserGeneralPublicLicenseaspublishedby
theFreeSoftwareFoundation,eitherversion3oftheLicense,or
(atyouroption)anylaterversion.
Thisprogramisdistributedinthehopethatitwillbeuseful,
butWITHOUTANYWARRANTY;withouteventheimpliedwarrantyof
MERCHANTABILITYorFITNESSFORAPARTICULARPURPOSE.Seethe
GNULesserGeneralPublicLicenseformoredetails.
YoushouldhavereceivedacopyoftheGNULesserGeneralPublicLicense
alongwiththisprogram.Ifnot,see.