NDKmol - molecular viewer

NDKmol--MolecularViewerforAndroid

==About==

NDKmolisamolecularviewerforAndroid.Youcanviewthreedimensionalstructuresofproteins,nucleicacidsandsmallmolecules.NDKmolsupportsmostofcommonrepresentationsformolecules,suchasribbon,trace,stick,sphereandline.NDKmolalsosupportssymmetryoperations;biologicalassembliesandcrystalpackingcanbedisplayed.YoucansearchanddownloadstructuresfromRCSBPDBandNCBIPubchem.

NDKmolhasalmostsamefunctionalityasGLmol,whichiswrittenin
WebGL/JavascriptandrunsonWebbrowsers.YoucantryGLmolathttp://webglmol.sourceforge.jp/index-en.html

==Features==

*ReadPDBorSDF/MOLfile
*Rotate/Translate/Zoommodelbyfinger
*Representations
-Line
-Stick
-Sphere(vanderWaalsradius)
-Alphacarbontrace
-Ribbon(ThinorThick)
-Strand
-Bfactortube
-Nucleicacidladder
-Nucleicacidline
-solvent'stars'
*Smoothingofbeta-sheets
*Coloring
-Bychain
-Bysecondarystructure(whendefinedinSHEET/HELIXrecords)
-ByElements
-Gradation(a.k.achainbow)
-Bfactor
-polar/nonpolar
*Crystallography
-Displayunitcell
-Showcrystalpacking(whendefinedinREMARKsection)
-Displaybiologicalassembly(whendefinedinREMARKsection)

==HowtoUse==

Whenlaunched,NDKmolautomaticallyloadsPorin(PDBID:2POR)asanexample.Youcanrotatethemoleculebyyourfinger.

Tozoomortranslatethemolecule,pressMENUbuttoninyourphone/tabletandselectthemode.Two-fingergesturesarealsosupported.

EverythingelsecanbedonefromtheMENU.

ToloadotherPDBfiles,pleaseputthefilein"PDB"directoryoftheSDcardandselect"Open"commandintheMENU.YoucanalsodownloadstructuresdirectlyfromRCSBPDBandNCBIPubChemwebserver.Select"SearchandDownload"inthemenu.

==Contact==

Projectwebsiteislocatedathttp://webglmol.sourceforge.jp/.Youcangetsourcecodesforthisprogramfromhere.

Commentsandsuggestionsarewelcomeathttp://sourceforge.jp/projects/webglmol/forums/orbiochem_fan@users.sourceforge.jp

===LICENSEnotice===

NDKmolitselfislicensedunderGNULesserGeneralPublicLicenseasfollows.

However,PDBfilesincludedasexamplesareunderDIFFERENTconditions.
Pleaseconsult
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/pdb_advisory.html

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NDKmol-MolecularViewerforAndroid

(C)Copyright2011,biochem_fan

Thisprogramisfreesoftware:youcanredistributeitand/ormodify
itunderthetermsoftheGNULesserGeneralPublicLicenseaspublishedby
theFreeSoftwareFoundation,eitherversion3oftheLicense,or
(atyouroption)anylaterversion.

Thisprogramisdistributedinthehopethatitwillbeuseful,
butWITHOUTANYWARRANTY;withouteventheimpliedwarrantyof
MERCHANTABILITYorFITNESSFORAPARTICULARPURPOSE.Seethe
GNULesserGeneralPublicLicenseformoredetails.

YoushouldhavereceivedacopyoftheGNULesserGeneralPublicLicense
alongwiththisprogram.Ifnot,see.